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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BLCA cis rs9309473 1 rs10187416 chr2:73713741 ALMS1P chr2:73872046-73912692:+ 0.4 5.97 5.39E-9 Metabolite levels
BLCA cis rs9309473 1 rs10189574 chr2:73698518 ALMS1P chr2:73872046-73912692:+ 0.39 5.84 1.1E-8 Metabolite levels
BLCA cis rs9309473 1 rs10190219 chr2:73658331 ALMS1P chr2:73872046-73912692:+ 0.34 5.04 7.19E-7 Metabolite levels
BLCA cis rs60843830 1 rs10193373 chr2:281886 SH3YL1 chr2:218138-264810:- -0.46 -12.19 4.13E-29 Spherical equivalent (joint main effects and education interaction)
BLCA cis rs9309473 1 rs10193972 chr2:73717656 ALMS1P chr2:73872046-73912692:+ 0.4 5.97 5.32E-9 Metabolite levels
BLCA cis rs6708331 1 rs10195155 chr2:70354475 FAM136A chr2:70523109-70529220:- -0.24 -4.3 2.13E-5 Obesity-related traits
BLCA cis rs6547741 1 rs10205364 chr2:27794233 C2orf16 chr2:27799389-27805588:+ 0.23 3.91 0.00011 Oral cavity cancer
BLCA cis rs9309473 1 rs10207220 chr2:73785046 ALMS1P chr2:73872046-73912692:+ 0.34 5.08 5.97E-7 Metabolite levels
BLCA cis rs9815354 1 rs10212536 chr3:41827026 ULK4 chr3:41288091-42003660:- 0.63 9.72 4.22E-20 Diastolic blood pressure
BLCA cis rs2294008 1 rs10216533 chr8:143763690 LY6D chr8:143866298-143868008:- 0.22 4.79 2.43E-6 Gastric adenocarcinoma (histologically verified);Non-cardia gastric cancer;Gastric cancer;Duodenal ulcer;Bladder cancer
BLCA cis rs2294008 1 rs10216533 chr8:143763690 PSCA chr8:143761875-143764142:+ 0.51 15.95 2.78E-44 Gastric adenocarcinoma (histologically verified);Non-cardia gastric cancer;Gastric cancer;Duodenal ulcer;Bladder cancer
BLCA cis rs10760706 1 rs10217692 chr9:102710431 STX17 chr9:102668915-102736817:+ -0.19 -3.92 0.000107 Alopecia areata
BLCA cis rs10218795 1 rs10218795 chr1:145416056 NOTCH2NL chr1:145209111-145295525:+ 0.64 5.99 4.82E-9 Coronary heart disease
BLCA cis rs2285947 1 rs10228845 chr7:21583617 DNAH11 chr7:21582833-21941455:+ -0.29 -4.83 2.0E-6 Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)
BLCA cis rs2285947 1 rs10229224 chr7:21583921 DNAH11 chr7:21582833-21941455:+ -0.3 -4.98 9.83E-7 Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)